According to multiple security sources, the dispute has intensified in recent weeks, with Ndayishimiye reportedly weighing the possibility of removing Niyongabo from his post — a move insiders say would be politically risky given the president’s weakening grip on power.
The latest flashpoint came on August 5, when Gen. Niyongabo dispatched soldiers to Mpimba prison in Bujumbura to forcibly free two detained colonels. The officers had been arrested under presidential orders on accusations of smuggling minerals from South Kivu into Burundi, as well as using army logistics vehicles to transport fuel and textiles.
Rather than face further investigation, they were swiftly sent back to eastern DRC under the army chief’s protection, without Ndayishimiye’s approval.
Military and local sources in Uvira, South Kivu, claim that Burundian army convoys routinely ferry food, weapons, and equipment into the DRC, returning at night loaded with minerals. A senior intelligence officer intimated that the president views Niyongabo as a key player in this illicit trade.
The tension is rooted in a lucrative arrangement signed in August 2023 between Ndayishimiye and Congolese President Félix Tshisekedi. The deal deployed around 20,000 Burundian troops to fight alongside Congolese forces against the M23 rebellion, with reports indicating that Tshisekedi pays $5,000 per soldier per month directly to Ndayishimiye. Soldiers, however, receive only their standard pay — about $70 for lower ranks and $100 for officers.
While the president has allegedly kept these earnings to himself, insiders say Niyongabo now wants a share of the spoils, creating a dangerous split at the top of Burundi’s military command.
The deployment has come at a high cost. Hundreds of Burundian soldiers have reportedly been killed in North Kivu over the past year. Morale is sinking, and resistance is growing — in January, 48 soldiers from the 20th Battalion refused to redeploy, leading to their arrest on charges of mutiny.
Ndayishimiye’s political standing has also been eroded by economic hardship at home and criticism over a recent cabinet reshuffle seen as driven by loyalty rather than competence. Within the CNDD-FDD ruling party, both the president and the army chief are losing popularity, with Niyongabo increasingly cast as a businessman in uniform and Ndayishimiye accused of putting personal profit above national interest.
For now, the confrontation between the two men remains behind closed doors, but observers warn that the standoff could escalate, destabilising Burundi’s already fragile political and security landscape — and complicating its role in the volatile Great Lakes region.
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